Package: cuRe 1.1.1

cuRe: Parametric Cure Model Estimation

Contains functions for estimating generalized parametric mixture and non-mixture cure models, loss of lifetime, mean residual lifetime, and crude event probabilities.

Authors:Lasse Hjort Jakobsen [aut, cre], Mark Clements [cph], Rasmus Kuhr Jensen [ctb], Lars Klingen Gjærde [ctb]

cuRe_1.1.1.tar.gz
cuRe_1.1.1.zip(r-4.5)cuRe_1.1.1.zip(r-4.4)cuRe_1.1.1.zip(r-4.3)
cuRe_1.1.1.tgz(r-4.4-any)cuRe_1.1.1.tgz(r-4.3-any)
cuRe_1.1.1.tar.gz(r-4.5-noble)cuRe_1.1.1.tar.gz(r-4.4-noble)
cuRe_1.1.1.tgz(r-4.4-emscripten)cuRe_1.1.1.tgz(r-4.3-emscripten)
cuRe.pdf |cuRe.html✨
cuRe/json (API)

# Install 'cuRe' in R:

install.packages('cuRe', repos = c('https://lassehjort.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/lassehjort/cure/issues

Datasets:

colonDC - Colon cancer data
survexp.dk - Ratetable of the Danish general population

On CRAN:

12 exports 6 stars 1.71 score 122 dependencies 2 mentions 9 scripts 308 downloads

Last updated 1 years agofrom:b8043decfe. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Aug 24 2024
R-4.5-win	OK	Aug 24 2024
R-4.5-linux	OK	Aug 24 2024
R-4.4-win	OK	Aug 24 2024
R-4.4-mac	OK	Aug 24 2024
R-4.3-win	OK	Aug 24 2024
R-4.3-mac	OK	Aug 24 2024

Exports:calc.Crude calc.Crude.quantile calc.cure.quantile calc.LL calc.LL.quantile cb cbc fit.cure.model general.haz GenFlexCureModel lrtest lts

Dependencies:backports base64enc bbmle bdsmatrix BH bslib cachem checkmate cli cluster cmprsk codetools colorspace cpp11 data.table date diagram digest doParallel dplyr evaluate fansi farver fastGHQuad fastmap fontawesome foreach foreign Formula fs future future.apply generics ggplot2 globals glue gridExtra gtable highr Hmisc htmlTable htmltools htmlwidgets isoband iterators jquerylib jsonlite KernSmooth knitr labeling lattice lava lazyeval lifecycle listenv magrittr MASS Matrix MatrixModels memoise mets mgcv mime multcomp munsell mvtnorm nlme nnet numDeriv pammtools parallelly pec pillar pkgconfig plotrix plyr polspline prodlim progressr Publish purrr quantreg R6 ranger rappdirs RColorBrewer Rcpp RcppArmadillo RcppEigen relsurv reshape2 riskRegression rlang rmarkdown rms rpart rstpm2 rstudioapi sandwich sass scales shape SparseM SQUAREM statmod stringi stringr survival TH.data tibble tidyr tidyselect timereg tinytex utf8 vctrs viridis viridisLite withr xfun yaml zoo

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Akaike information criterion	AIC.cm
Akaike information criterion	AIC.gfcm
Bayesian information criterion	BIC.cm
Bayesian information criterion	BIC.gfcm
Polynomial B-splines with eXtensions	bsx
Crude event probabilities	calc.Crude
Compute the time to statistical cure using the conditional probability of disease-related death	calc.Crude.quantile
Compute the time to statistical cure using the conditional probability of cure	calc.cure.quantile
Loss of lifetime estimation	calc.LL
Compute the time to statistical cure using the loss of lifetime function	calc.LL.quantile
Restricted cubic splines	cb
Restricted cubic splines with cure	cbc
Colon cancer data	colonDC
Parametric cure model	fit.cure.model
Extract general population hazard	general.haz
Fit generalized mixture cure model	GenFlexCureModel
Likelihood ratio tests for comparing nested cure models	lrtest
Long term survival predictions	lts
Plot crude event probabilities	plot.crude
Plot function for Flexible mixture cure model	plot.cuRe
Plot the loss of lifetime function	plot.le
Plot the long term survival	plot.lts
Predict function for flexible mixture cure model	predict.cm
Predict function for flexible mixture cure model	predict.gfcm
Ratetable of the Danish general population	survexp.dk